NORMFINDER

NormFinder is an algorithm for identifying the optimal normalization gene among a set of candidates (2004)

REGMEX

Regmex is a package for evaluation of motif rank correlation in a list of ranked DNA or RNA sequences (2018)

METHCORR SOFTWARE

Infer iRNA expression scores for 11 cancer types from DNA methylation 450K chip β-values (2020)

GENOVO

Identifying disease genes with de-novo mutations (2020)

NMIBC CLASSIFIER

An integrated multi-omics analysis identifies prognostic molecular subtypes of non-muscle-invasive bladder cancer (2021)

MIREACT

miRNA reactivities inferred from single cell RNAseq expression data (2021)

CSG PREDICTION

Classifying cGAS-STING activity links chromosomal instability with immunotherapy response in metastatic bladder cancer (2021)

KMERPAPA

Bioinformatic tool to calculate a "k-mer pattern partition" from position specific k-mer counts (2021)

DREAMS

Deep Read-level Error Model for Sequencing data. Includes modules for ctDNA variant calling and cancer detection (2022)

CASTLE

R package for Circulating Tumor DNA Detection by Droplet Digital PCR (2022)

GENIUS

Multiomics data analysis based on spatial transformation (2022)

NORMFINDER

NormFinder is an algorithm for identifying the optimal normalization gene among a set of candidates (2004)

methcorr software

Infer iRNA expression scores for 11 cancer types from DNA methylation 450K chip β-values (2020)

NMIBC Classifier

An integrated multi-omics analysis identifies prognostic molecular subtypes of non-muscle-invasive bladder cancer (2021)

CASTLE

R package for Circulating Tumor DNA Detection by Droplet Digital PCR (2022)

miReact

miRNA reactivities inferred from single cell RNAseq expression data (2021)

RegMex

Regmex is a package for evaluation of motif rank correlation in a list of ranked DNA or RNA sequences (2018)

DREAMs

Deep Read-level Error Model for Sequencing data. Includes modules for ctDNA variant calling and cancer detection (2022)

CSG prediction

Classifying cGAS-STING activity links chromosomal instability with immunotherapy response in metastatic bladder cancer (2021)

kmerpapa

Bioinformatic tool to calculate a "k-mer pattern partition" from position specific k-mer counts (2021)

GENOVO

Identifying disease genes with de-novo mutations (2020)